Thanks or the contribution @dimitris-iliou. But before you put too much effort in it, be informed that during one of the last ORT community meetings it was agreed that the best solution to address the issue is to not have duplicate IDs between project and packages to begin with, and deduplicate these by replacing references with package linkage in the dependency tree by references that link to the project instead.

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 68.01%. Comparing base (3fac582) to head (f2f7c66).
Report is 2489 commits behind head on main.

@@            Coverage Diff            @@
##               main    #7494   +/-   ##
=========================================
  Coverage     68.01%   68.01%           
  Complexity     2023     2023           
=========================================
  Files           339      339           
  Lines         16719    16719           
  Branches       2371     2371           
=========================================
  Hits          11371    11371           
  Misses         4363     4363           
  Partials        985      985           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Thanks or the contribution @dimitris-iliou. But before you put too much effort in it, be informed that during one of the last ORT community meetings it was agreed that the best solution to address the issue is to not have duplicate IDs between project and packages to begin with, and deduplicate these by replacing references with package linkage in the dependency tree by references that link to the project instead.

@sschuberth : How might multiple subdirectories with the same python package dependencies within each requirements.txt file be constructed to not throw an exception?

20:18:16.195 [DefaultDispatcher-worker-1] ERROR java.lang.Object - Multiple projects with the same id 'PIP::src:1b11e6b573ecdb3a109776554dc04462bc00a82b' found. Not adding the project defined in 'https://github.com/organization/repository.git/src/module1/requirements.txt' to the analyzer results as it duplicates the project defined in 'https://github.com/organization/repository/src/module2/requirements.txt'.
Exception in thread "main" java.lang.IllegalArgumentException: Unable to create the AnalyzerResult as it contains packages and projects with the same ids: 
...

from this TODO

causing this exception

For example:

`+ src
|_ src/module1/requirements.txt
|_ src/module2/requirements.txt